All plugins
CalcJobs and calculation functions aiida.calculations CalcJob parsers aiida.parsers
aiida-dlpoly
AiiDA workflow plugin for the DL_POLY molecular dynamics software package
status alpha
AiiDA
>=2.6
General information
Registry checks
All checks passed
Plugins provided
Calculations 1 Parsers 1
Entry points
-
dlpoly
class:aiida_dlpoly.calculations.base:DLPOLYCalculationAiiDA calculation plugin for running molecular dynamics with DL_POLY.
Input Required Valid types Description configurationtrue SinglefileData, StructureDataThe 'CONFIG' file or a AiiDA StructureData object containing thedefinition of the molecular/particle based system. controltrue SinglefileData, DictThe control parameters for the simulation either in a pre-formatted DL_POLY 'CONTROL' file or as a dictionary of inputs fieldtrue SinglefileDataThe force field definition file in DL_POLY format. codefalse AbstractCode, NoneTypeThe `Code` to use for this job. This input is required, unless the `remote_folder` input is specified, which means an existing job is being imported and no code will actually be run. metadatafalse monitorsfalse DictAdd monitoring functions that can inspect output files while the job is running and decide to prematurely terminate the job. remote_folderfalse RemoteData, NoneTypeRemote directory containing the results of an already completed calculation job without AiiDA. The inputs should be passed to the `CalcJob` as normal but instead of launching the actual job, the engine will recreate the input files and then proceed straight to the retrieve step where the files of this `RemoteData` will be retrieved as if it had been actually launched through AiiDA. If a parser is defined in the inputs, the results are parsed and attached as output nodes as usual. Output Required Valid types Description outputtrue SinglefileDataThe main DL_POLY 'OUTPUT' file. remote_foldertrue RemoteDataInput files necessary to run the process will be stored in this folder node. retrievedtrue FolderDataFiles that are retrieved by the daemon will be stored in this node. By default the stdout and stderr of the scheduler will be added, but one can add more by specifying them in `CalcInfo.retrieve_list`. revive_configurationtrue SinglefileDataThe final configuration generated to enable simulation restart. statisticstrue ArrayDataStatistics collected throughout the simulation. historyfalse TrajectoryDataThe DL_POLY simulation trajectory. rdffalse SinglefileDataRadial Distribution Function data file produced by DL_POLY. remote_stashfalse RemoteStashDataContents of the `stash.source_list` option are stored in this remote folder after job completion. Exit status Message 1 The process has failed with an unspecified error. 2 The process failed with legacy failure mode. 10 The process returned an invalid output. 11 The process did not register a required output. 100 The process did not have the required `retrieved` output. 110 The job ran out of memory. 120 The job ran out of walltime. 131 The specified account is invalid. 140 The node running the job failed. 150 {message} 160 {message} 300 Error accessing the main DL_POLY output file. 301 DL_POLY raised an error during execution. See the 'OUTPUT' file for more information 302 Error accessing the DL_POLY statistics file. 303 Unable to find the expected REVCON file. 304 Unable to find the expected RDF data file. 305 Unable to find the expected trajectory file.
-
dlpoly
aiida_dlpoly.parsers.base:DLPOLYParser